compare detected splice junctions to reference gene model
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
the alignment in bam format
*.{bam}
bai{:bash}
BAM index file
*.{bai}
bed{:bash}
a bed file for the reference gene model
*.{bed}
pdf{:bash}
Junction saturation report
*.pdf
*.pdf{:bash}
rscript{:bash}
*.r{:bash}
Junction saturation R-script
*.r
versions_rseqc{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
rseqc{:bash}
The tool name
junction_saturation.py --version | sed "s/junction_saturation.py //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
