compare detected splice junctions to reference gene model
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the alignment in bam format
*.{bam}
bai
BAM index file
*.{bai}
bed
a bed file for the reference gene model
*.{bed}
pdf
Junction saturation report
*.pdf
rscript
*.r
Junction saturation R-script
versions_rseqc
${task.process}
:string
The process the versions were collected from
rseqc
The tool name
junction_saturation.py --version | sed "s/junction_saturation.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
