Description

Converts a PED file to VCF headers

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

input:file

The input file, can be either a PED or a VCF file

*.{vcf,vcf.gz,ped}

Output

name:type
description
pattern

output

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{vcf.gz,ped}:file

The output file, can be either a filtered PED file or a VCF file containing the PED headers (needs —vcf as argument)

*.{vcf.gz,ped}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

rtgtools
BSD

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation