Converts a PED file to VCF headers
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input
:file
The input file, can be either a PED or a VCF file
*.{vcf,vcf.gz,ped}
output
*.{vcf.gz,ped}
The output file, can be either a filtered PED file or a VCF file containing the PED headers (needs –vcf as argument)
versions_rtgtools
${task.process}
:string
The process the versions were collected from
rtgtools
The name of the tool
rtg version | sed 's/Product: RTG Tools //; q'
:eval
The expression to obtain the version of the tool
versions
RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation
