Description

Converts a PED file to VCF headers

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

input (file)

The input file, can be either a PED or a VCF file

*.{vcf,vcf.gz,ped}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

output (file)

The output file, can be either a filtered PED file
or a VCF file containing the PED headers (needs —vcf as argument)

*.{vcf.gz,ped}

Tools

rtgtools
BSD

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation