Converts a PED file to VCF headers
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
The input file, can be either a PED or a VCF file
*.{vcf,vcf.gz,ped}
output{:bash}
*.{vcf.gz,ped}{:bash}
The output file, can be either a filtered PED file or a VCF file containing the PED headers (needs —vcf as argument)
*.{vcf.gz,ped}
versions_rtgtools{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
rtgtools{:bash}
The name of the tool
rtg version | sed 's/Product: RTG Tools //; q'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation
