modules/rtgtools_rocplot

Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn’t possible for nextflow.

rtgtoolsrocplotvalidationvcf

https://github.com/nf-core/modules/[...]/modules/nf-core/rtgtools/rocplot

Description

Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn’t possible for nextflow.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`input:file`

Input TSV ROC files created with RTGTOOLS_VCFEVAL

*.tsv.gz

Output

name:type

description

pattern

`png`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.png:file`

The resulting rocplot in PNG format

*.png

`svg`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.svg:file`

The resulting rocplot in SVG format

*.svg

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

rtgtools
BSD

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation

realtimegenomics.com/products/rtg-tools github.com/RealTimeGenomics/rtg-tools

modules/rtgtools_rocplot

Description

Input

meta:map

input:file

Output

png

meta:map

*.png:file

svg

meta:map

*.svg:file

versions

versions.yml:file

Tools

rtgtools BSD

`meta:map`

`input:file`

`png`

`meta:map`

`*.png:file`

`svg`

`meta:map`

`*.svg:file`

`versions`

`versions.yml:file`

rtgtools
BSD