Description

Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn’t possible for nextflow.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

input (file)

Input TSV ROC files created with RTGTOOLS_VCFEVAL

*.tsv.gz

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

png (file)

The resulting rocplot in PNG format

*.png

svg (file)

The resulting rocplot in SVG format

*.svg
author
Github user nvnieuwk
get in touch
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Tools

rtgtools
BSD

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation

realtimegenomics.com/products/rtg-tools github.com/RealTimeGenomics/rtg-tools