modules/rtgtools_rocplot

Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn’t possible for nextflow.

rtgtoolsrocplotvalidationvcf

https://github.com/nf-core/modules/[...]/modules/nf-core/rtgtools/rocplot

Description

Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn’t possible for nextflow.

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`input`
`:file`

Input TSV ROC files created with RTGTOOLS_VCFEVAL

*.tsv.gz

Output

name:type

description

pattern

`png`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.png`
`:file`

The resulting rocplot in PNG format

*.png

`svg`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.svg`
`:file`

The resulting rocplot in SVG format

*.svg

`versions_rtgtools`

`${task.process}`
`:string`

The process the versions were collected from

`rtgtools`
`:string`

The name of the tool

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The process the versions were collected from

`rtgtools`
`:string`

The name of the tool

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

The expression to obtain the version of the tool

Tools

rtgtools
BSD

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation

realtimegenomics.com/products/rtg-tools cdn.jsdelivr.net/gh/RealTimeGenomics/rtg-tools@master/installer/resources/tools/RTGOperationsManual.pdf https://github.com/RealTimeGenomics/rtg-tools

modules/rtgtools_rocplot

Description

Input

`meta`
`:map`

`input`
`:file`

Output

`png`

`meta`
`:map`

`*.png`
`:file`

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions_rtgtools`

`${task.process}`
`:string`

`rtgtools`
`:string`

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`rtgtools`
`:string`

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

Tools

rtgtools
BSD

maintainer

get in touch

modules/rtgtools_rocplot

Description

Input

meta:map

input:file

Output

png

meta:map

*.png:file

svg

meta:map

*.svg:file

versions_rtgtools

${task.process}:string

rtgtools:string

rtg version | sed 's/Product: RTG Tools //; q':eval

Topics

versions

${task.process}:string

rtgtools:string

rtg version | sed 's/Product: RTG Tools //; q':eval

Tools

rtgtools BSD

maintainer

get in touch

`meta`
`:map`

`input`
`:file`

`png`

`meta`
`:map`

`*.png`
`:file`

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions_rtgtools`

`${task.process}`
`:string`

`rtgtools`
`:string`

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

`versions`

`${task.process}`
`:string`

`rtgtools`
`:string`

`rtg version | sed 's/Product: RTG Tools //; q'`
`:eval`

rtgtools
BSD