Description

Uses the RTN R package for transcriptional regulatory network inference (TNI).

Input

Name (Type)
Description
Pattern

expression_matrix (file)

expression matrix in TSV format

*.tsv

Output

Name (Type)
Description
Pattern

tni (file)

RDS R Object with the TNI object

tni.rds

tni_perm (file)

RDS R Object with the TNI object after permutation

tni_permutated.rds

tni_bootstrap (file)

RDS R Object with the TNI object after permutation and bootstrap

tni_bootstrapped.rds

tni_filtered (file)

RDS R Object with the TNI object after permutation, bootstrap and filtering

tni_filtered.rds

versions (file)

File containing software versions

versions.yml
maintainer
Github user mribeirodantas
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