Description

Uses the RTN R package for transcriptional regulatory network inference (TNI).

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

expression_matrix:file

expression matrix in TSV format

*.tsv

Output

name:type
description
pattern

tni

meta:file

RDS R Object with the TNI object

tni.rds

tni.rds:file

RDS R Object with the TNI object

tni.rds

tni_perm

meta:file

RDS R Object with the TNI object after permutation

tni_permutated.rds

tni_permutated.rds:file

RDS R Object with the TNI object after permutation

tni_permutated.rds

tni_bootstrap

meta:file

RDS R Object with the TNI object after permutation and bootstrap

tni_bootstrapped.rds

tni_bootstrapped.rds:file

RDS R Object with the TNI object after permutation and bootstrap

tni_bootstrapped.rds

tni_filtered

meta:file

RDS R Object with the TNI object after permutation, bootstrap and filtering

tni_filtered.rds

tni_filtered.rds:file

RDS R Object with the TNI object after permutation, bootstrap and filtering

tni_filtered.rds

versions

versions.yml:file

File containing software versions

versions.yml

Tools

Github user mribeirodantas
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