Description

Prediction of a protein’s secondary structure from its amino acid sequence

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

fasta{:bash}

:file

protein FASTA file containing one or more amino acid sequences to predict their respective secondary structures

*.{fasta,fa,fas,fna,faa}

Output

name:type
description
pattern

preds{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}{:bash}

:directory

A folder with all the prediction outputs

${prefix}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

s4pred
GPL v3-or-later

Accurate prediction of a protein's secondary structure from its amino acid sequence