Description

Create index for salmon

Input

name:type
description
pattern

genome_fasta{:bash}

:file

Fasta file of the reference genome

transcript_fasta{:bash}

:file

Fasta file of the reference transcriptome

Output

name:type
description
pattern

index{:bash}

salmon{:bash}

:directory

Folder containing the star index files

salmon

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

salmon
GPL-3.0-or-later

Salmon is a tool for wicked-fast transcript quantification from RNA-seq data