modules/salmon_index

Create index for salmon

indexfastagenomereference

https://github.com/nf-core/modules/[...]/modules/nf-core/salmon/index

Description

Create index for salmon

Input

Name (Type)

Description

Pattern

`genome_fasta` (file)

Fasta file of the reference genome

`transcriptome_fasta` (file)

Fasta file of the reference transcriptome

Output

Name (Type)

Description

Pattern

`index` (directory)

Folder containing the star index files

salmon

`versions` (file)

File containing software versions

versions.yml

Tools

salmon
GPL-3.0-or-later

Salmon is a tool for wicked-fast transcript quantification from RNA-seq data

salmon.readthedocs.io/en/latest/salmon 10.1038/nmeth.4197