Create index for salmon
meta
:map
Groovy Map containing reference information e.g. [ id:‘genome’ ]
transcript_fasta
:file
Fasta file of the reference transcriptome
genome_fasta
Fasta file of the reference genome, used to build decoy sequences. Optional: pass [] to build a non-decoy-aware index.
[]
index
salmon
:directory
Folder containing the salmon index files
versions_salmon
${task.process}
:string
The name of the process
The name of the tool
salmon --version | sed 's/salmon //'
:eval
The expression to obtain the version of the tool
versions
Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
