Outputs some statistics drawn from read flags.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM file
*.{bam}
stats
*.stats
Stats file
*.{stats}
versions_sambamba
${task.process}
:string
The name of the process
sambamba
The name of the tool
sambamba --version 2>&1 | grep -oPm1 'sambamba \\K[0-9.]+'
:eval
The expression to obtain the version of the tool
versions
Tools for working with SAM/BAM data
