Description

Outputs some statistics drawn from read flags.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bam{:bash}

:file

BAM file

*.{bam}

Output

name:type
description
pattern

stats{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.stats{:bash}

:file

Stats file

*.{stats}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools