Description

Outputs some statistics drawn from read flags.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

BAM file

*.{bam}

Output

name:type
description
pattern

stats

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.stats:file

Stats file

*.{stats}

versions

versions.yml:file

File containing software versions

versions.yml

Tools