find and mark duplicate reads in BAM file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
*.bam
Sorted BAM/CRAM/SAM file
bai
*.bai
An optional BAM index file.
*.{bai}
versions_sambamba
${task.process}
:string
The name of the process
sambamba
The name of the tool
sambamba --version 2>&1 | grep -oPm1 'sambamba \\K[0-9.]+'
:eval
The expression to obtain the version of the tool
versions
process your BAM data faster!
