Description

find and mark duplicate reads in BAM file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

bam (file)

Sorted BAM/CRAM/SAM file

*.{bam,cram,sam}
author
Github user BioInf2305
get in touch
Ask a question on Slack Open an issue on GitHub

Tools