Description

find and mark duplicate reads in BAM file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bam (file)

Sorted BAM/CRAM/SAM file

*.{bam,cram,sam}

bai (file)

An optional BAM index file.

*.{bai}
maintainer
Github user BioInf2305
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