find and mark duplicate reads in BAM file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
*.bam{:bash}
Sorted BAM/CRAM/SAM file
bai{:bash}
*.bai{:bash}
An optional BAM index file.
*.{bai}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
process your BAM data faster!
