Description

List CRAM Content-ID and Data-Series sizes

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

cram:file

CRAM file

*.cram

Output

name:type
description
pattern

size

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.size:file

Size information file

*.size

versions

versions.yml:file

File containing software versions

versions.yml

Tools

samtools
MIT

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.