Description

Create a sequence dictionary file from a FASTA file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

FASTA file

*.{fa,fasta}

Output

name:type
description
pattern

dict

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.dict:file

FASTA dictionary file

*.{dict}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

samtools
MIT

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.