Index FASTA file
meta
Groovy Map containing reference information e.g. [ id:‘test’ ]
fasta
FASTA file
*.{fa,fasta}
meta2
fai
FASTA index file
*.{fai}
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gzi
Optional gzip index file for compressed inputs
*.gzi
versions
File containing software versions
versions.yml
SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.
