Groovy Map containing reference information
e.g. [ id:‘test’ ]
fasta:file
FASTA file
*.{fa,fasta}
meta2:map
Groovy Map containing reference information
e.g. [ id:‘test’ ]
fai:file
FASTA index file
*.{fai}
Output
name:type
description
pattern
fa
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.{fa,fasta}:file
FASTA file
*.{fa}
fai
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.fai:file
FASTA index file
*.{fai}
gzi
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.gzi:file
Optional gzip index file for compressed inputs
*.gzi
versions
versions.yml:file
File containing software versions
versions.yml
Tools
samtools
MIT
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
