Groovy Map containing sample information
e.g. [ id:'sample1' ]
data{:bash}
:file
A directory in 10x Genomics format containing matrix.mtx.gz, features.tsv.gz, barcodes.tsv.gz (hashing count matrix), or an AnnData (.h5ad) file with hashing counts stored in .obs.
cell_hashing_columns{:bash}
:list
Groovy list (['hash_1', 'hash_2']) of .obs columns that contain cell hashing counts.
Can be [] if the data is in 10x Genomics format, as the columns are derived from the input.
Output
name:type
description
pattern
assignment{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
*_assignment_hashsolo.csv{:bash}
:file
CSV file containing hashsolo assignment results
*_assignment_hashsolo.csv
h5ad{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:'sample1' ]
