SCIMAP is a suite of tools that enables spatial single-cell analyses
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
cellbyfeature
:file
CSV file with cell by feature table
*.{csv}
csv
*.csv
Sorted CSV file
h5ad
*.h5ad
Sorted H5AD file
*.{h5ad}
versions_scimap
${task.process}
:string
The name of the process
scimap
The name of the tool
2.1.3
The version of the tool
versions
Scimap is a scalable toolkit for analyzing spatial molecular data.
