SCIMAP is a suite of tools that enables spatial single-cell analyses
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
cellbyfeature:file
CSV file with cell by feature table
*.{csv}
csv
*.csv:file
Sorted CSV file
h5ad
*.h5ad:file
Sorted H5AD file
*.{h5ad}
versions
versions.yml:file
File containing software versions
versions.yml
Scimap is a scalable toolkit for analyzing spatial molecular data.