SCIMAP is a suite of tools that enables spatial single-cell analyses
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
cellbyfeature{:bash}
:file
CSV file with cell by feature table
*.{csv}
csv{:bash}
*.csv{:bash}
Sorted CSV file
h5ad{:bash}
*.h5ad{:bash}
Sorted H5AD file
*.{h5ad}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Scimap is a scalable toolkit for analyzing spatial molecular data.
