Use pangenome outputs for GWAS
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
genes
:file
A presence/absence matrix of genes in the pan-genome
*.csv
traits
A CSV file containing trait information per-sample
tree
A Newick formatted tree for phylogenetic analyses
*.{dnd,nwk,treefile}
csv
Gene associations in a CSV file per trait
versions_scoary
${task.process}
:string
The name of the process
scoary
The name of the tool
scoary --version 2>&1
:eval
The expression to obtain the version of the tool
versions
Microbial pan-GWAS using the output from Roary
