Use pangenome outputs for GWAS
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
genes:file
A presence/absence matrix of genes in the pan-genome
*.csv
traits:file
A CSV file containing trait information per-sample
tree:file
A Newick formatted tree for phylogenetic analyses
*.{dnd,nwk,treefile}
csv
*.csv:file
Gene associations in a CSV file per trait
versions
versions.yml:file
File containing software versions
versions.yml
Microbial pan-GWAS using the output from Roary
