Use pangenome outputs for GWAS
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
genes
A presence/absence matrix of genes in the pan-genome
*.csv
traits
A CSV file containing trait information per-sample
tree
A Newick formtted tree for phylogenetic analyses
*.{dnd,nwk,treefile}
versions
File containing software versions
versions.yml
csv
Gene associations in a CSV file per trait
Microbial pan-GWAS using the output from Roary
