modules/scramble_clusteranalysis
The Cluster Analysis tool of Scramble analyses and interprets the soft-clipped clusters found by cluster_identifier
soft-clipped clustersscramble
Description
The Cluster Analysis tool of Scramble analyses and interprets the soft-clipped clusters found by cluster_identifier
Input
Name (Type)
Description
Pattern
Tab-delimited text file containing soft-clipped clusters. Has to be generated using scramble/clusteridentifier
*clusters.txt
Optional fasta reference file. This file is needed to create a VCF file and to evaluate predicted deletions.
*.{fasta,fa}