Call peaks using SEACR on sequenced reads in bedgraph format
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bedgraph
The target bedgraph file from which the peaks will be calculated.
ctrlbedgraph
Control (IgG) data bedgraph file to generate an empirical threshold for peak calling.
threshold
Threshold value used to call peaks if the ctrlbedgraph input is set to []. Set to 1 if using a control bedgraph
bed
Bed file containing the calculated peaks.
*.bed
versions
File containing software versions
versions.yml
SEACR is intended to call peaks and enriched regions from sparse CUT&RUN or chromatin profiling data in which background is dominated by "zeroes" (i.e. regions with no read coverage).
