Generate genome indices for segemehl align
meta
:map
Groovy Map containing genome information e.g. [ id:‘genome’ ]
fasta
:file
Reference genome FASTA file
*.{fa,fasta}
index
*.idx
Segemehl index file
*.{idx}
versions_segemehl
${task.process}
:string
The name of the process
segemehl
The name of the tool
segemehl.x 2>&1 | sed '/^ [0-9]\.[0-9\.]*/!d;s/^ //;s/ .*//'
:eval
The expression to obtain the version of the tool
versions
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
