modules/segemehl_index

Generate genome indices for segemehl align

indexcircrnasplicingfusions

https://github.com/nf-core/modules/[...]/modules/nf-core/segemehl/index

Description

Generate genome indices for segemehl align

Input

name:type

description

pattern

`fasta:file`

Reference genome FASTA file

*.{fa,fasta}

Output

name:type

description

pattern

`index`

`*.idx:file`

Segemehl index file

*.{idx}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

segemehl
GPL v3

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

bioinf.uni-leipzig.de/Software/segemehl 10.1186/gb-2014-15-2-r34