metagenomic binning with self-supervised learning
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta:file
Fasta file of the assembled contigs
*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
bam:file
BAM/CRAM/SAM file
*.{bam,cram}
csv
${prefix}/*.csv:file
generated files
*.csv
model
${prefix}/*.h5:file
model file
*.h5
tsv
${prefix}/*.tsv:file
information of bins
*.tsv
output_fasta
${prefix}/output_bins/*.fa.gz:file
precluster fasta files
*.fa
versions
versions.yml:file
File containing software versions
versions.yml
Metagenomic binning with semi-supervised siamese neural network
