Description

metagenomic binning with self-supervised learning

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

Fasta file of the assembled contigs

*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}

bam:file

BAM/CRAM/SAM file

*.{bam,cram}

Output

name:type
description
pattern

csv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.csv:file

generated files

*.csv

model

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.h5:file

model file

*.h5

output_fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

output_prerecluster_bins/*.fa:file

precluster fasta files

*.fa

recluster_fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

output_recluster_bins/*.fa:file

recluster fasta files

*.fa

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

information of bins

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml