metagenomic binning with self-supervised learning
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta{:bash}
:file
Fasta file of the assembled contigs
*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
bam{:bash}
BAM/CRAM/SAM file
*.{bam,cram}
csv{:bash}
${prefix}/*.csv{:bash}
generated files
*.csv
model{:bash}
${prefix}/*.h5{:bash}
model file
*.h5
tsv{:bash}
${prefix}/*.tsv{:bash}
information of bins
*.tsv
output_fasta{:bash}
${prefix}/output_bins/*.fa.gz{:bash}
precluster fasta files
*.fa
versions_semibin{:bash}
${task.process}{:bash}
:string
The name of the process
SemiBin{:bash}
The name of the tool
SemiBin2 --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Metagenomic binning with semi-supervised siamese neural network
