metagenomic binning with self-supervised learning
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta
:file
Fasta file of the assembled contigs
*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
bam
BAM/CRAM/SAM file
*.{bam,cram}
csv
${prefix}/*.csv
generated files
*.csv
model
${prefix}/*.h5
model file
*.h5
tsv
${prefix}/*.tsv
information of bins
*.tsv
output_fasta
${prefix}/output_bins/*.fa.gz
precluster fasta files
*.fa
versions_semibin
${task.process}
:string
The name of the process
SemiBin
The name of the tool
SemiBin2 --version
:eval
The expression to obtain the version of the tool
versions
Metagenomic binning with semi-supervised siamese neural network
