modules/sentieon_bwaindex

Create BWA index for reference genome

indexfastagenomereferencesentieon

https://github.com/nf-core/modules/[...]/modules/nf-core/sentieon/bwaindex

Description

Create BWA index for reference genome

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

`fasta{:bash}`
`:file`

Input genome fasta file

Output

name:type

description

pattern

`index{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

`bwa{:bash}`
`:file`

BWA genome index files

*.{amb,ann,bwt,pac,sa}

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

sentieon

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

sentieon.com

modules/sentieon_bwaindex

Description

Input

`meta{:bash}`
`:map`

`fasta{:bash}`
`:file`

Output

`index{:bash}`

`meta{:bash}`
`:map`

`bwa{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

sentieon

included in

maintainers

get in touch

modules/sentieon_bwaindex

Description

Input

meta{:bash}:map

fasta{:bash}:file

Output

index{:bash}

meta{:bash}:map

bwa{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

sentieon

included in

maintainers

get in touch

`meta{:bash}`
`:map`

`fasta{:bash}`
`:file`

`index{:bash}`

`meta{:bash}`
`:map`

`bwa{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`