modules/sentieon_bwaindex

Create BWA index for reference genome

indexfastagenomereferencesentieon

https://github.com/nf-core/modules/[...]/modules/nf-core/sentieon/bwaindex

Description

Create BWA index for reference genome

Input

name:type

description

pattern

`meta:map`

Groovy Map containing reference information. e.g. [ id:‘test’, single_end

]

`fasta:file`

Input genome fasta file

Output

name:type

description

pattern

`index`

`meta:map`

Groovy Map containing reference information. e.g. [ id:‘test’, single_end

]

`bwa:file`

BWA genome index files

*.{amb,ann,bwt,pac,sa}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

sentieon

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

sentieon.com

modules/sentieon_bwaindex

Description

Input

`meta:map`

`fasta:file`

Output

`index`

`meta:map`

`bwa:file`

`versions`

`versions.yml:file`

Tools

sentieon

included in

maintainers

get in touch