modules/sentieon_dnascope
DNAscope algorithm performs an improved version of Haplotype variant calling.
Input
bed or interval_list file containing interval in the reference that will be used in the analysis
*.{bed,interval_list}
Controls the option pcr_indel_model for Dnascope.
The possible options are “NONE” (used for PCR free samples), and “HOSTILE”, “AGGRESSIVE” and “CONSERVATIVE”.
See Sentieons documentation for further explanation.
Controls the vcf output from Dnascope.
Possible options are “all”, “confident” and “variant”.
See Sentieons documentation for further explanation.
Tools
sentieon
Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.