modules/sentieon_tnfilter
Filters the raw output of sentieon/tnhaplotyper2.
tnfilterfiltersentieontnhaplotyper2vcf
Input
Name (Type)
Description
Pattern
the location and file name of the file containing the contamination information produced by ContaminationModel.
*.contamination_data.tsv
the location and file name of the file containing the tumor segments information produced by ContaminationModel.
*.segments
the location and file name of the file containing the orientation bias information produced by OrientationBias.
*.orientation_data.tsv
Tools
sentieon
Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.