modules/sentieon_tnhaplotyper2
Tnhaplotyper2 performs somatic variant calling on the tumor-normal matched pairs.
tnseqtnhaplotyper2sentieonvariant_calling
Input
Name (Type)
Description
Pattern
If true, the module will run the sentieon algorithm TNhaplotyper2 followed by the sentieon algorithm OrientationBias.
Tools
sentieon
Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.