Description

Statistics for FASTA or FASTQ files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

files (file)

One or more FASTA or FASTQ files

*.{fasta,fastq,fasta.gz,fastq.gz,fq,fq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

stats (file)

Tab-separated output file with basic sequence statistics.

*.{tsv}

multiqc (file)

MultiQC ready table

*.{_mqc.txt}

Tools

seqfu
GPL v3

Cross-platform compiled suite of tools to manipulate and inspect FASTA and FASTQ files