Description

Concatenating multiple uncompressed sequence files together

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

input (file)

Sequence file in fasta/q format

*.{fasta,fastq,fa,fq,fas,fna,faa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

fastx (file)

A concatenated sequence file

*.{fasta,fastq,fa,fq,fas,fna,faa}

versions (file)

File containing software versions

versions.yml
maintainer
Github user DLBPointon
get in touch
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Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.

github.com/shenwei356/seqkit bioinf.shenwei.me/seqkit https://github.com/shenwei356/seqkit 10.1371/journal.pone.0163962