Description

Concatenating multiple uncompressed sequence files together

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

input

:file

Sequence file in fasta/q format

*.{fasta,fastq,fa,fq,fas,fna,faa}

Output

name:type
description
pattern

fastx

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.{fasta,fastq,fa,fq,fas,fna,faa}

:file

A concatenated sequence file

*.{fasta,fastq,fa,fq,fas,fna,faa}

versions_seqkit

${task.process}

:string

The name of the process

seqkit

:string

The name of the tool

seqkit version | sed 's/^.*v//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

seqkit

:string

The name of the tool

seqkit version | sed 's/^.*v//'

:eval

The expression to obtain the version of the tool

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.