Description

Concatenating multiple uncompressed sequence files together

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

input:file

Sequence file in fasta/q format

*.{fasta,fastq,fa,fq,fas,fna,faa}

Output

name:type
description
pattern

fastx

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.{fasta,fastq,fa,fq,fas,fna,faa}:file

A concatenated sequence file

*.{fasta,fastq,fa,fq,fas,fna,faa}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.