Description

Convert FASTQ to FASTA format

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

fastq:file

Sequence file in fastq format

*.{fastq,fq}.gz

Output

name:type
description
pattern

fasta

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.fa.gz:file

Sequence file in fasta format

*.{fasta,fa}.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.