Convert FASTQ to FASTA format
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fastq{:bash}
:file
Sequence file in fastq format
*.{fastq,fq}.gz
fasta{:bash}
*.fa.gz{:bash}
Sequence file in fasta format
*.{fasta,fa}.gz
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/^.*v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
