Select sequences from a large file based on name/ID
Groovy Map containing sample information e.g. [ id:‘test’, single_end
Fasta or fastq file containing sequences to be filtered
pattern file (one record per line). If no pattern is given, a string can be specificied within the args using ‘-p pattern_string’
File containing software versions
Fasta or fastq file containing the filtered sequences
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.