match up paired-end reads from two fastq files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input paired-end FastQ files.
*.paired.fastq.gz{:bash}
Paired fastq reads
*.paired.fastq.gz
unpaired_reads{:bash}
*.unpaired.fastq.gz{:bash}
Unpaired reads (optional)
*.unpaired.fastq.gz
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/^.*v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
