Description

Transforms sequences (extract ID, filter by length, remove gaps, reverse complement…)

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

fastx:file

Input fasta/fastq file

*.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}

Output

name:type
description
pattern

fastx

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

${prefix}.${extension}:file

Output fasta/fastq file

*.{fasta,fasta.gz,fastq,fastq.gz}

log

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.log:file

Log containing information regarding removed duplicates

*.log

versions

versions.yml:file

File containing software versions

versions.yml

Tools

Github user GallVp
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