Sanitize broken single line FASTQ files
meta
:map
Groovy Map containing sample information. e.g. [ id:‘sample1’]
reads
:file
One line for each sequence and quality value
*.{fq,fastq}{,.gz}
${prefix}${extension}
Parsed fastq file without malformed entries/lines
*.${extension}
log
${prefix}.log
Log file produced by the seqkit/sana software
*.log
versions_seqkit
${task.process}
:string
The name of the process
seqkit
The name of the tool
seqkit version | sed 's/^.*v//'
:eval
The expression to obtain the version of the tool
versions
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation.
