Description

Use seqkit to generate sliding windows of input fasta

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastx (file)

fasta/q file

*.{fasta,fastq,fa,fq,fas,fna,faa}*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

windows (file)

fasta/q window file

*.{fasta,fastq,fa,fq,fas,fna,faa}*

versions (file)

File containing software versions

versions.yml

Tools

seqkit

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.