Description

Split single or paired-end fastq.gz files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

FastQ files

*.{fq.gz/fastq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

Split fastq files

*.{fq.gz/fastq.gz}

versions (file)

File containing software versions

versions.yml
included in
callingcards
maintainer
Github user FriederikeHanssen
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.

github.com/shenwei356/seqkit bioinf.shenwei.me/seqkit 10.1371/journal.pone.0163962