Description

Split single or paired-end fastq.gz files

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads{:bash}

:file

FastQ files

*.{f[aq].gz/fast[aq].gz}

Output

name:type
description
pattern

reads{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}/*{:bash}

:file

Split fastq files

*.{f[aq][.gz]/fast[aq][.gz]}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.