Description

Split single or paired-end fastq.gz files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads:file

FastQ files

*.{fq.gz/fastq.gz}

Output

name:type
description
pattern

reads

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

**/*.gz:file

Split fastq files

*.{fq.gz/fastq.gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.