simple statistics of FASTA/Q files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
Either FASTA or FASTQ files.
*.{fa,fna,faa,fasta,fq,fastq}[.gz]
stats{:bash}
*.tsv{:bash}
Tab-separated output file with basic sequence statistics.
*.tsv
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/^.*v//'{:bash}
:eval
The expression to obtain the version of seqkit
versions{:bash}
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
