Description

simple statistics of FASTA/Q files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

Either FASTA or FASTQ files.

*.{fa,fna,faa,fasta,fq,fastq}[.gz]

Output

name:type
description
pattern

stats

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

Tab-separated output file with basic sequence statistics.

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.