Description

simple statistics of FASTA/Q files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads (file)

Either FASTA or FASTQ files.

*.{fa,fna,faa,fasta,fq,fastq}[.gz]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

stats (file)

Tab-separated output file with basic sequence statistics.

*.tsv

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.