Convert tabular format (first two/three columns) to FASTA/Q format.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
text
:file
Text file in tabular format
*.txt[.gz,.zst]
out_ext
:string
Output file extension (for example fa.zst, fq.gz)
fa.zst
fq.gz
fastx
*.f*
Sequence file in fasta/q format
*.{fa,fq}[.gz,.zst]
versions_seqkit
${task.process}
The name of the process
seqkit
The name of the tool
seqkit version | sed 's/^.*v//'
:eval
The expression to obtain the version of the tool
versions
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
