Description

Convert tabular format (first two/three columns) to FASTA/Q format.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

text{:bash}

:file

Text file in tabular format

*.txt[.gz,.zst]

Output

name:type
description
pattern

fastx{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.f*{:bash}

:file

Sequence file in fasta/q format

*.{fa,fq}[.gz,.zst]

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.