Description

Convert tabular format (first two/three columns) to FASTA/Q format.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

text (file)

Text file in tabular format

*.txt[.gz,.zst]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastx (file)

Sequence file in fasta/q format

*.{fa,fq}[.gz,.zst]

versions (file)

File containing software versions

versions.yml

Tools

seqkit
MIT

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.