Convert tabular format (first two/three columns) to FASTA/Q format.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
text{:bash}
:file
Text file in tabular format
*.txt[.gz,.zst]
fastx{:bash}
*.f*{:bash}
Sequence file in fasta/q format
*.{fa,fq}[.gz,.zst]
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/^.*v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
