Salmonella serotype prediction from reads and assemblies
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
seqs{:bash}
:file
FASTQ or FASTA formatted sequences
*.{fq.gz,fastq.gz,fna.gz,fna,fasta.gz,fasta,fa.gz,fa}
log{:bash}
results/*_log.txt{:bash}
A log of serotype antigen results
*_log.txt
tsv{:bash}
results/*_result.tsv{:bash}
Tab-delimited summary of the SeqSero2 results
*_result.tsv
txt{:bash}
results/*_result.txt{:bash}
Detailed summary of the SeqSero2 results
*_result.txt
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Salmonella serotype prediction from genome sequencing data
