Salmonella serotype prediction from reads and assemblies
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
seqs:file
FASTQ or FASTA formated sequences
*.{fq.gz,fastq.gz,fna.gz,fna,fasta.gz,fasta,fa.gz,fa}
log
results/*_log.txt:file
A log of serotype antigen results
*_log.txt
tsv
results/*_result.tsv:file
Tab-delimited summary of the SeqSero2 results
*_result.tsv
txt
results/*_result.txt:file
Detailed summary of the SeqSero2 results
*_result.txt
versions
versions.yml:file
File containing software versions
versions.yml
Salmonella serotype prediction from genome sequencing data
