Description

Generates a BED file containing genomic locations of lengths of N.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

A single fasta file to be split.

*.{fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

The output bed which summarised locations of cuts

*.{bed}

versions (file)

File containing software versions

versions.yml
author
Github user DLBPointon
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Tools

seqtk
MIT

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.

github.com/lh3/seqtk docs.csc.fi/apps/seqtk https://github.com/lh3/seqtk