Generates a BED file containing genomic locations of lengths of N.
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
A single fasta file to be split.
*.{fasta}
Output
name:type
description
pattern
bed{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.bed{:bash}
:file
The output bed which summarised locations of cuts
*.{bed}
versions_seqtk{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
:string
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
:string
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
Tools
seqtk
MIT
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
