Generates a BED file containing genomic locations of lengths of N.
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
A single fasta file to be split.
*.{fasta}
Output
name:type
description
pattern
bed{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.bed{:bash}
:file
The output bed which summarised locations of cuts
*.{bed}
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
seqtk
MIT
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
