Description

Generates a BED file containing genomic locations of lengths of N.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

A single fasta file to be split.

*.{fasta}

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.bed:file

The output bed which summarised locations of cuts

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

seqtk
MIT

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.