Generates a BED file containing genomic locations of lengths of N.
Input
name:type
description
pattern
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
fasta:file
A single fasta file to be split.
*.{fasta}
Output
name:type
description
pattern
bed
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.bed:file
The output bed which summarised locations of cuts
*.{bed}
versions
versions.yml:file
File containing software versions
versions.yml
Tools
seqtk
MIT
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
