Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
reads:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
*.{fastq.gz}
Output
name:type
description
pattern
reads
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.fastq.gz:file
If single-end reads, the output is the same as the input, 1 FastQ file for each read. If pair-end reads, the read pairs will be interleaved and output as 1 FastQ file for each read pair.
*.{fastq.gz}
versions
versions.yml:file
File containing software versions
versions.yml
Tools
seqtk
MIT
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
