Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
*.{fastq.gz}
Output
name:type
description
pattern
reads{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.fastq.gz{:bash}
:file
If single-end reads, the output is the same as the input, 1 FastQ file for each read. If pair-end reads, the read pairs will be interleaved and output as 1 FastQ file for each read pair.
*.{fastq.gz}
versions_seqtk{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
:string
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
:string
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
Tools
seqtk
MIT
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
