Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
reads (file)
List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
*.{fastq.gz}
Output
Name (Type)
Description
Pattern
meta (map)
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
versions (file)
File containing software versions
versions.yml
reads (file)
If single-end reads, the output is the same as the input, 1 FastQ file for each read. If pair-end reads, the read pairs will be interleaved and output as 1 FastQ file for each read pair.
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk mergepe command merges pair-end reads into one interleaved file.
