Rename sequence names in FASTQ or FASTA files.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
sequences{:bash}
:file
A FASTQ or FASTA file
*.{fastq.gz, fastq, fq, fq.gz, fasta, fastq.gz, fa, fa.gz, fas, fas.gz, fna, fna.gz}
*.gz{:bash}
FASTQ/FASTA file containing renamed sequences
*.{fastq.gz, fasta.gz}
versions_seqtk{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk rename command renames sequence names.
