Description

Select only sequences that match the filtering condition

Input

Name (Type)
Description
Pattern

sequences (file)

FASTQ/FASTA file

*.{fq,fq.gz,fa,fa.gz}

filter_list (file)

BED file or a text file with a list of sequence names

*.{bed,lst}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

sequences (file)

FASTQ/FASTA file

*.{fq.gz,fa.gz}

Tools

seqtk
MIT

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format