Description

Trim low quality bases from FastQ files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input FastQ files

*.{fastq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

reads (file)

Filtered FastQ files

*.{fastq.gz}
included in
demo
maintainer
Github user laramiellindsey
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

seqtk
MIT

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format

github.com/lh3/seqtk docs.csc.fi/apps/seqtk https://github.com/lh3/seqtk