Description
PileupCaller is a tool to create genotype calls from bam files using read-sampling methods
Input
Name (Type)
Description
Pattern
Eigenstrat format .snp file of the sites in the mpileup file to call genotypes on.
Only alleles matching the Ref and Alt alleles of the provided snp file will be called.
The desired calling method for pileupcaller. One of ‘randomHaploid’, ‘randomDiploid’, or ‘majorityCall’.