Induce a variation graph in GFA format from alignments in PAF format
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
paf:list
comma-separated PAF file(s) of alignments, single entry allowed
[*.{paf,paf.gz},*.{paf,paf.gz},...]
fasta:file
FASTA file used to generate alignments
*.{fa,fa.gz,fasta,fasta.gz}
gfa
*.gfa:file
Variation graph in GFA 1.0 format
*.{gfa}
versions
versions.yml:file
File containing software versions
versions.yml
seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments.
