Induce a variation graph in GFA format from alignments in PAF format
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
paf
:list
comma-separated PAF file(s) of alignments, single entry allowed
[*.{paf,paf.gz},*.{paf,paf.gz},...]
fasta
:file
FASTA file used to generate alignments
*.{fa,fa.gz,fasta,fasta.gz}
gfa
*.gfa
Variation graph in GFA 1.0 format
*.{gfa}
versions_seqwish
${task.process}
:string
The name of the process
seqwish
The name of the tool
seqwish --version |& sed 's/v//;s/-.*//'
:eval
The expression to obtain the version of the tool
versions
seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments.
