Determine Streptococcus pneumoniae serotype from Illumina paired-end reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Input Illunina paired-end FASTQ files
*.{fq.gz,fastq.gz}
versions
File containing software versions
versions.yml
tsv
The predicted serotype in tab-delimited format
*.tsv
txt
A detailed description of the predicted serotype
*.txt
SeroBA is a k-mer based pipeline to identify the Serotype from Illumina NGS reads for given references.
