Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/most_frequent_unmatched.tsv{:bash}
:file
File containing approx. counts of barcodes that did not match the expected barcodes
${prefix}/most_frequence_unmatched.tsv
per_project_metrics{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/per_project_metrics.tsv{:bash}
:file
Summary metrics for samples in the same project
${prefix}/per_project_metrics.tsv
per_sample_metrics{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/per_sample_metrics.tsv{:bash}
:file
Summary metrics for each sample
${prefix}/per_sample_metrics.tsv
sample_barcode_hop_metrics{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/sample_barcode_hop_metrics.tsv{:bash}
:file
File output for dual-indexed runs with barcodes which are unexpected combinations of
expected barcodes e.g. expected barcodes = AA-TT/GG-CC and observed barcodes = AA-CC/GG-TT
${prefix}/sample_barcode_hop_metrics/tsv
versions_sgdemux{:bash}
${task.process}{:bash}
:string
The name of the process
sgdemux{:bash}
:string
The name of the tool
sgdemux --version | cut -d " " -f2{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
sgdemux{:bash}
:string
The name of the tool
sgdemux --version | cut -d " " -f2{:bash}
:eval
The expression to obtain the version of the tool
Tools
sgdemux
For Singular G4™ Sequencing Platform only
Tool for demultiplexing sequencing data generated on Singular Genomics' sequencing instruments.
