Determine Shigella serotype from Illumina or Oxford Nanopore reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Illumina or Nanopore FASTQ file
*.fastq.gz
versions
File containing software versions
versions.yml
tsv
A TSV formatted file with ShigaTyper results
*.tsv
hits
A TSV formatted file with individual gene hits
*-hits.tsv
Typing tool for Shigella spp. from WGS Illumina sequencing
